Add the butter, olive oil, sliced onions, beef broth, red wine, salt and pepper into the slow cooker. Add the fresh thyme sprigs. Stir well.Cover the cooker and set to high. Cook for 6-8 hours on high, or until the onions are soft and transparent, stirring occasionally.Remove the thyme sprigs and cool the onions.
To prepare the stuffed shells:
Preheat oven to 425 degrees Fahrenheit (220 degrees Celsius).
Spray (or brush) the bottom of the baking dish with olive oil and place the sliced French bread (cut side up) into the dish.
Drizzle (or brush) the bread with olive oil and sprinkle the bread evenly with the garlic powder and half of the fresh thyme leaves.
Use a large spoon to liberally fill the cooked and cooled pasta shells with the cooled caramelized onions.Place the stuffed shells on top of the prepared French bread slices.
Add the prepared cheese over the stuffed shells and sprinkle the top with the remaining fresh thyme leaves.
Bake uncovered in a preheated oven for 30-35 minutes or until the cheese is melted and golden and the shells are heated through.If additional time is needed, cover the dish with foil and return it to the oven for 10-12 more minutes.
Notes
*Note - The red wine cooked onions can be made in advance and kept in the refrigerator for up to 5 days, or until ready to assemble the casserole.Store any leftovers in an airtight container in the refrigerator for up to 5 days.May be frozen. Store in an airtight freezer container. Label and date. Freeze for up to 2 months. Thaw in the refrigerator overnight.Reheat, uncovered, in a moderate oven or air fryer until hot.